Decoding life: exploring applications of nanopore sequencing and bioinformatics

Unlock the potential of Oxford Nanopore Technology and explore its vast applications in the bioeconomy and healthcare sectors. From agricultural genomics and environmental monitoring to clinical diagnostics and cancer research, this cutting-edge technology is revolutionizing the field. Imagine being able to identify pathogens, detect genetic mutations, and analyze microbial communities, all with the power of nanopore sequencing! This workshop is a unique opportunity to gain practical skills and knowledge in third-generation sequencing technology. 

Why Attend?

  • Hands-On Experience: Extract DNA from a variety of samples, including cultured microorganisms, yeasts, fungi, soil, water, biofilm, blood, and tissue.
  • Expert Guidance: Learn from experienced professionals at Howest University of Applied Sciences.
  • Real-World Applications: Bring your own sample for sequence analysis and see the technology in action.


Workshop Highlights:

  • Pre-Workshop Online Session: Get an introduction to sequencing technologies and DNA extraction methods.
  • Day 1-3: Dive into the lab to extract DNA, create and sequence a DNA library, and load your sample for nanopore sequencing.
  • Day 4-5: Analyze your data using Oxford Nanopore's EPI2ME software, as well as other platforms like Galaxy and our in-house MetaTec tool.
  • Final Online Showcase: Present your analyzed samples and discoveries. We end the programme with sharing our experiences.
     

Whether you're a student, researcher, or professional, you'll leave with the expertise to apply these techniques in your own work.

Date:

20th of April 2026 to 22nd of May 2026

Language of instruction:

English

3 ECTS credits
Academic recognition:

To be defined by each higher education institution. Generally, most students will have this BIP certified in their diploma supplement as a minimal condition.

Eligible participants:

Students, researchers, and educators in life sciences, biotech, or related fields at bachelor’s or master’s level. Ideal for those involved in lab-based research using sequencing and data analysis, and for individuals seeking to improve scientific reporting and intercultural communication skills.

How to apply:

Application for this product is not yet possible.

Planned application opening date: 28th of November 2025

Programme at a glance

Online classes (online)
20 Apr - 01 May 2026 :
The online phase begins with an introduction session to meet the lecturers and students and understand the project. It continues with a deep dive into sequencing technologies and a literature study to build foundational knowledge. You'll then explore research methods and sample preparation techniques. A dedicated session on science communication helps you learn how to share scientific findings effectively. Finally, online quizzes test your understanding before the hands-on F2F week begins.
Face-to-face (F2F) week (in person)
04 May - 08 May 2026 :
Campus Brugge Station, Building A Brugge Belgium
The face-to-face week kicks off with a campus tour and lab orientation, followed by intensive hands-on lab work including DNA extraction, library preparation, and nanopore sequencing. Midweek shifts toward data analysis and troubleshooting, complemented by a social activity for networking. The latter part of the week focuses on interpreting sequencing results using various platforms, finalizing sample analysis, and reflecting on the learning experience. A network reception and final wrap-up round out the week.
Post-F2F (online)
11 May - 22 May 2026 :
After the face-to-face week, participants continue working on their data analysis, refining results and preparing final presentations. Online coaching sessions support both scientific communication and technical aspects. The phase concludes with online presentations where teams share their findings and receive feedback.

Learning outcomes

By the end of this Erasmus+ Blended Intensive Programme, learners will be able to:

The student investigates the specific characteristics of their own communication style, remedies it if necessary, and explores the communication style of the other (cultural communicative competence).

The student uses appropriate communication styles and norms in an intercultural context.

The student compares (elements of) professional practice in his/her home country with (elements of) professional practice in other countries.

The student selects and applies relevant sequencing technologies to support scientific research and data processing.

The student performs DNA extraction using appropriate methods, and evaluates the efficiency and reliability of the chosen techniques.

The student conducts DNA quantity and quality control (QC) assessments and interprets the results to ensure sample integrity for downstream applications.

The student uses appropriate data analysis tools to process and interpret sequencing data, demonstrating proficiency in selecting and applying suitable software or platforms.

The student prepares and delivers a clear, well-structured scientific presentation, demonstrating the ability to communicate complex information effectively.

Selection criteria

🧬 Participant selection criteria

Each RUN-EU partner institution is responsible for selecting candidates from among their students and staff to attend the workshop. Selection will be based on the following criteria:

  • Compliance with prerequisites (basic understanding of molecular biology and readiness for lab work)
  • Order of submission
  • Motivation to apply third-generation sequencing technologies in research or professional practice
  • Demonstrated interest or background in genomics, bioinformatics, or related fields
  • Ability to actively participate and contribute to BIP activities

Partners are encouraged to ensure a balanced representation of students and staff, fostering interdisciplinary exchange and collaboration across RUN-EU member institutions.

👥 Participant Capacity

A total of 20 participants will be selected:

  • 20 confirmed participants
  • 5 candidates on a waiting list in case of cancellations

Involved organisations and persons

Howest University of Applied Sciences

Lead Organisation, Host Organisation
  • Cedric Hermans (Regional Stakeholder)
  • Kaat Janssens (Instructor)
  • Noor Samyn (Regional Stakeholder)
  • Paco Hulpiau (Lead Instructor)

Polytechnic University of Leiria

Partner Organisation
  • Maria Sampaio (Instructor)

Technological University of the Shannon

Partner Organisation
Product label: BIP-NANSEQBI-01